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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4q7f 3D1 Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4q7f 3D1Uncharacterized protein / 0.907
1vc9 ATPDiadenosine hexaphosphate hydrolase 3.6.1.61 0.686
2j9l ATPH(+)/Cl(-) exchange transporter 5 / 0.685
3iv6 SAMUncharacterized protein / 0.685
2e41 BTX235aa long hypothetical biotin--[acetyl-CoA-carboxylase] ligase / 0.680
3fws ANPTranscriptional repressor CcpN / 0.663
5f8e SAHPossible transcriptional regulatory protein / 0.662
3seq NXXGlutamine-dependent NAD(+) synthetase 6.3.5.1 0.661
2d7d ADPUvrABC system protein B / 0.659
2ewn BTXBifunctional ligase/repressor BirA / 0.658
4twr NADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase / 0.657
3grr SAHProbable ribosomal RNA small subunit methyltransferase A / 0.656
3zu0 A12NAD 5'-nucleotidase 3.1.3.5 0.655
5f8f SFGPossible transcriptional regulatory protein / 0.655
3sez NXXGlutamine-dependent NAD(+) synthetase 6.3.5.1 0.653
4uy6 SAHHistidine N-alpha-methyltransferase / 0.651
3bgi SAHThiopurine S-methyltransferase 2.1.1.67 0.650