2.730 Å
X-ray
2011-06-10
Name: | Glutamine-dependent NAD(+) synthetase |
---|---|
ID: | NADE_MYCTU |
AC: | P9WJJ3 |
Organism: | Mycobacterium tuberculosis |
Reign: | Bacteria |
TaxID: | 83332 |
EC Number: | 6.3.5.1 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 40 % |
D | 60 % |
B-Factor: | 40.187 |
---|---|
Number of residues: | 44 |
Including | |
Standard Amino Acids: | 41 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.626 | 641.250 |
% Hydrophobic | % Polar |
---|---|
37.89 | 62.11 |
According to VolSite |
HET Code: | NXX |
---|---|
Formula: | C21H24N6O15P2 |
Molecular weight: | 662.394 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 55.15 % |
Polar Surface area: | 340.58 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 19 |
H-Bond Donors: | 5 |
Rings: | 5 |
Aromatic rings: | 3 |
Anionic atoms: | 3 |
Cationic atoms: | 1 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
-1.2707 | -64.2528 | 69.8742 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N1A | NH1 | ARG- 354 | 3.15 | 134.69 | H-Bond (Protein Donor) |
C5N | CB | ALA- 459 | 4.02 | 0 | Hydrophobic |
O1A | ND2 | ASN- 471 | 3.2 | 165.36 | H-Bond (Protein Donor) |
O3B | O | GLY- 475 | 3.09 | 171.62 | H-Bond (Ligand Donor) |
C1B | CG2 | ILE- 476 | 4.04 | 0 | Hydrophobic |
C5N | CB | THR- 492 | 3.88 | 0 | Hydrophobic |
O2A | N | TYR- 493 | 2.63 | 157.4 | H-Bond (Protein Donor) |
C5B | CZ | PHE- 634 | 4.28 | 0 | Hydrophobic |
C1B | CZ | PHE- 634 | 4.26 | 0 | Hydrophobic |
DuAr | DuAr | PHE- 634 | 3.61 | 0 | Aromatic Face/Face |
O2A | NZ | LYS- 635 | 3 | 125.62 | H-Bond (Protein Donor) |
O2A | NZ | LYS- 635 | 3 | 0 | Ionic (Protein Cationic) |
N6A | O | SER- 661 | 3.26 | 149.51 | H-Bond (Ligand Donor) |