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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4p6x HCY Glucocorticoid receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4p6x HCYGlucocorticoid receptor / 1.062
4udc DEXGlucocorticoid receptor / 0.845
3mnp DEXGlucocorticoid receptor / 0.814
1m2z DEXGlucocorticoid receptor / 0.806
2a3i C0RMineralocorticoid receptor / 0.799
3mno DEXGlucocorticoid receptor / 0.784
3mne DEXGlucocorticoid receptor / 0.780
2aa7 1CAMineralocorticoid receptor / 0.764
2aa6 STRMineralocorticoid receptor / 0.753
2aa5 STRMineralocorticoid receptor / 0.737
2ab2 SNLMineralocorticoid receptor / 0.721
1sr7 MOFProgesterone receptor / 0.716
1ya3 STRMineralocorticoid receptor / 0.715
2abi 1CAMineralocorticoid receptor / 0.715
1p93 DEXGlucocorticoid receptor / 0.705
4p6w MOFGlucocorticoid receptor / 0.705
3vhu SNLMineralocorticoid receptor / 0.695
1y9r 1CAMineralocorticoid receptor / 0.683
3s79 ASDAromatase 1.14.14.14 0.676
3eqm ASDAromatase 1.14.14.14 0.675
3iw1 ASDSteroid C26-monooxygenase 1.14.13.141 0.672
4nky 3QZSteroid 17-alpha-hydroxylase/17,20 lyase / 0.669
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
4uda DEXMineralocorticoid receptor / 0.658
5dxg ESTEstrogen receptor / 0.657
2d06 ESTSulfotransferase 1A1 2.8.2.1 0.656
2qgt EEDEstrogen receptor / 0.656
2cbo TH2Neocarzinostatin / 0.650