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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ovi N01 Phenylacetone monooxygenase 1.14.13.92

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ovi N01Phenylacetone monooxygenase 1.14.13.92 1.244
4d03 NAPPhenylacetone monooxygenase 1.14.13.92 1.084
4d04 NAPPhenylacetone monooxygenase 1.14.13.92 1.082
2ylt NAPPhenylacetone monooxygenase 1.14.13.92 1.057
2ylx NAPPhenylacetone monooxygenase 1.14.13.92 1.054
4c77 N01Phenylacetone monooxygenase 1.14.13.92 1.037
3gwd NAPCyclohexanone monooxygenase / 1.003
2ylr NAPPhenylacetone monooxygenase 1.14.13.92 0.985
2ym2 NAPPhenylacetone monooxygenase 1.14.13.92 0.978
3uoy NAP2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.905
3uoz NAP2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.888
3up5 NAP2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.847
2ym1 NAPPhenylacetone monooxygenase 1.14.13.92 0.837
3up4 NAP2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.834
2ylw NAPPhenylacetone monooxygenase 1.14.13.92 0.832
3gwf NAPCyclohexanone monooxygenase / 0.752
4b68 NAPL-ornithine N(5)-monooxygenase / 0.739
2q0k NAPThioredoxin reductase 1.8.1.9 0.731
4b65 NDPL-ornithine N(5)-monooxygenase / 0.731
4b63 NAPL-ornithine N(5)-monooxygenase / 0.719
3s5w NAPL-ornithine N(5)-monooxygenase / 0.718
4b66 NAPL-ornithine N(5)-monooxygenase / 0.715
2wow NDPTrypanothione reductase / 0.712
3phi NDPShikimate dehydrogenase (NADP(+)) / 0.707
4gcm NAPThioredoxin reductase 1.8.1.9 0.704
3lzw NAPFerredoxin--NADP reductase 2 1.18.1.2 0.702
2xlp NAPPutative flavin-containing monooxygenase / 0.698
1nyt NAPShikimate dehydrogenase (NADP(+)) / 0.690
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.686
2q0l NAPThioredoxin reductase 1.8.1.9 0.679
4b67 NAPL-ornithine N(5)-monooxygenase / 0.679
2c3c NAP2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.678
2olq ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.678
4oqy NDP(S)-imine reductase / 0.675
3m0e ATPTranscriptional regulator (NtrC family) / 0.673
4cbq NDPThioredoxin reductase / 0.672
2vq7 NAPPutative flavin-containing monooxygenase / 0.671
2xls NAPPutative flavin-containing monooxygenase / 0.671
3cge NDPCoenzyme A disulfide reductase / 0.668
3ean NAPThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.664
4aos NAPSteroid monooxygenase / 0.663
4b64 NAPL-ornithine N(5)-monooxygenase / 0.663
2zzc NAPThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.661
2hk9 ATRShikimate dehydrogenase (NADP(+)) / 0.660
2ce7 ADPATP-dependent zinc metalloprotease FtsH / 0.659
3t3f N5PDNA polymerase I, thermostable 2.7.7.7 0.659
4tny DTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.659
5cku NAPL-ornithine N(5)-monooxygenase / 0.658
4jq3 NAPAldo-keto reductase family 1 member C2 / 0.656
4to4 DGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.655
1get NAPGlutathione reductase 1.8.1.7 0.653
1lqu NDPNADPH-ferredoxin reductase FprA 1.18.1.2 0.653
3l1c ADPProtein claret segregational / 0.652