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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4nt0 3DU Orotidine 5'-phosphate decarboxylase 4.1.1.23

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4nt0 3DUOrotidine 5'-phosphate decarboxylase 4.1.1.23 0.994
3ewy U5PUridine 5'-monophosphate synthase 4.1.1.23 0.719
3l0n S5PUridine 5'-monophosphate synthase 4.1.1.23 0.712
1w4z NAPPutative ketoacyl reductase 1.3.1 0.669
3mzb BHRNickel-binding periplasmic protein / 0.669
1lol XMPOrotidine 5'-phosphate decarboxylase 4.1.1.23 0.659
3mw0 BHRNickel-binding periplasmic protein / 0.658
3o9p MHIPeriplasmic murein peptide-binding protein / 0.657
3u9e COALmo1369 protein / 0.657
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.655
2tpl HPPTyrosine phenol-lyase 4.1.99.2 0.653
4h6p FMNChromate reductase / 0.653
3mz9 BHNNickel-binding periplasmic protein / 0.652
4hib 16BUridine 5'-monophosphate synthase 4.1.1.23 0.652