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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4nmc FAD Bifunctional protein PutA

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4nmc FADBifunctional protein PutA / 1.570
4nmd FDABifunctional protein PutA / 1.252
4nm9 FADBifunctional protein PutA / 1.220
4nmb FADBifunctional protein PutA / 1.182
4q73 FADBifunctional protein PutA / 1.092
4q72 FADBifunctional protein PutA / 1.069
3haz FADBifunctional protein PutA / 1.060
4o8a FADBifunctional protein PutA 1.2.1.88 1.051
4q71 FADBifunctional protein PutA / 1.049
2fzm FADBifunctional protein PutA 1.5.5.2 1.034
1tj1 FADBifunctional protein PutA 1.5.5.2 0.974
2fzn FADBifunctional protein PutA 1.5.5.2 0.956
1tj2 FADBifunctional protein PutA 1.5.5.2 0.910
2g37 FADProline dehydrogenase / 0.869
1tj0 FADBifunctional protein PutA 1.5.5.2 0.865
4h6r FDAProline dehydrogenase / 0.858
3e2s FADBifunctional protein PutA 1.5.5.2 0.857
3n3b FMNProtein NrdI / 0.710
1kyv RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.707
1djq FMNTrimethylamine dehydrogenase 1.5.8.2 0.702
5ebu FMNLactate oxidase / 0.697
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.696
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.693
2zry FNRIsopentenyl-diphosphate delta-isomerase / 0.678
3sf6 FDAGlutaryl-CoA dehydrogenase / 0.676
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.675
1ych FMNNitric oxide reductase 1 0.673
3n39 FMNProtein NrdI / 0.672
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.672
3axb FADPutative oxidoreductase / 0.669
1vrq FMNSubunit alpha of sarocosine oxidase / 0.668
1vrq FMNSubunit beta of sarcosine oxidase / 0.668
4df2 FMNNADPH dehydrogenase / 0.660
1amo FMNNADPH--cytochrome P450 reductase / 0.659
4q4k FMNUncharacterized protein / 0.659
1ycg FMNNitric oxide reductase 1 0.658
2j6x FMNLactate oxidase / 0.657
3n14 FMNXenobiotic reductase / 0.656
3b4y F42F420-dependent glucose-6-phosphate dehydrogenase / 0.654
3tjl FMNNADPH dehydrogenase / 0.654
1k02 FMNNADPH dehydrogenase 1 1.6.99.1 0.653
4rje FNRLactate oxidase / 0.652
1dor FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.651
1gox FMNPeroxisomal (S)-2-hydroxy-acid oxidase 1.1.3.15 0.651
1lm1 FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.651
1fcb FMNCytochrome b2, mitochondrial 1.1.2.3 0.650
1x31 FMNSubunit alpha of sarocosine oxidase / 0.650
1x31 FMNSubunit beta of sarcosine oxidase / 0.650
4m5p FMNNADPH dehydrogenase / 0.650