Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4n65 FMN FMN-dependent NADH-azoreductase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4n65 FMNFMN-dependent NADH-azoreductase 1 / 1.202
4n9q FMNFMN-dependent NADH-azoreductase 1 / 1.153
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.860
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.814
2z9d FMNFMN-dependent NADH-azoreductase / 0.814
3klb FMNUncharacterized protein / 0.776
3w77 FMNFMN-dependent NADH-azoreductase / 0.762
4r81 FMNPredicted NADH dehydrogenase / 0.762
4hs4 FMNChromate reductase / 0.760
1t5b FMNFMN-dependent NADH-azoreductase / 0.759
4h6p FMNChromate reductase / 0.758
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.746
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.733
5f12 FMNNAD(P)H dehydrogenase (quinone) / 0.729
4gi5 FADPutative NAD(P)H dehydrogenase (Quinone) / 0.728
1ych FMNNitric oxide reductase 1 0.718
4j8p FMNFlavodoxin / 0.717
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.715
2bn4 FMNNADPH--cytochrome P450 reductase / 0.712
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.711
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.709
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.708
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.706
1ycf FMNNitric oxide reductase 1 0.705
3rpe FADPutative modulator of drug activity / 0.705
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.704
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.703
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.699
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.698
2q9u FMNA-type flavoprotein / 0.698
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.695
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.693
4uth FMNXenobiotic reductase / 0.692
4utm FNRXenobiotic reductase / 0.692
2r97 FMNNAD(P)H dehydrogenase (quinone) / 0.691
4bmp FMNProtein NrdI / 0.685
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.683
2fcr FMNFlavodoxin / 0.683
4y7c FMNNADPH--cytochrome P450 reductase / 0.680
1z44 FMNNADPH dehydrogenase / 0.679
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.678
3l5l FMNXenobiotic reductase / 0.676
1ycg FMNNitric oxide reductase 1 0.675
4bmo FMNProtein NrdI / 0.674
2ohj FMNType A flavoprotein FprA 1 0.670
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.669
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.669
3qfr FMNNADPH--cytochrome P450 reductase / 0.667
2djx FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.663
2ohh FMNType A flavoprotein FprA 1 0.662
2w5u FMNFlavodoxin / 0.662
4ef8 FMNDihydroorotate dehydrogenase (fumarate) / 0.662
2djl FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.661
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.661
4ef9 FMNDihydroorotate dehydrogenase (fumarate) / 0.661
3tjl FMNNADPH dehydrogenase / 0.660
4tmb FMNOld yellow enzyme / 0.660
1jue FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.659
3f6s FMNFlavodoxin / 0.659
3p8i FMNPentaerythritol tetranitrate reductase / 0.659
4kqs RISFarnesyl pyrophosphate synthase 2.5.1.10 0.658
1h50 FMNPentaerythritol tetranitrate reductase / 0.657
4dy4 FMNNAD(P)H dehydrogenase (quinone) / 0.657
2ohi FMNType A flavoprotein FprA 1 0.656
3l67 FMNXenobiotic reductase / 0.656
3n3a FMNProtein NrdI / 0.656
3qe2 FMNNADPH--cytochrome P450 reductase / 0.655
3n3b FMNProtein NrdI / 0.653
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.653
4yl2 FMNLactate oxidase / 0.651