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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4lvg 20O Nicotinamide phosphoribosyltransferase 2.4.2.12

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4lvg 20ONicotinamide phosphoribosyltransferase 2.4.2.12 1.116
4jr5 1LSNicotinamide phosphoribosyltransferase 2.4.2.12 0.897
4jnm 1LJNicotinamide phosphoribosyltransferase 2.4.2.12 0.772
4o1d DGBNicotinamide phosphoribosyltransferase 2.4.2.12 0.753
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4lvb 20NNicotinamide phosphoribosyltransferase 2.4.2.12 0.722
4o1b DGBNicotinamide phosphoribosyltransferase 2.4.2.12 0.684
4m6p 20RNicotinamide phosphoribosyltransferase 2.4.2.12 0.680
4e5f 0N7Polymerase acidic protein / 0.660
4kfn 1QRNicotinamide phosphoribosyltransferase 2.4.2.12 0.659
2jj3 JJ3Estrogen receptor beta / 0.650