Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4lsa BLD Protein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4lsa BLDProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 1.363
3rj0 BLDProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 1.065
3rgz BLDProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.928
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4boe CLRJapanin / 0.672
4bqu CLRJapanin / 0.660
4e5f 0N7Polymerase acidic protein / 0.660
2b04 CHOPhospholipase A2, major isoenzyme 3.1.1.4 0.659