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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4l2i FAD Electron transfer flavoprotein alpha/beta-subunit

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4l2i FADElectron transfer flavoprotein alpha/beta-subunit / 1.588
4kpu FADElectron transfer flavoprotein alpha/beta-subunit / 1.410
2dek SAHDiphthine synthase / 0.737
2emu SAHDiphthine synthase / 0.727
2e08 SAHDiphthine synthase / 0.726
2p6l SAHDiphthine synthase / 0.726
1mjh ATPUniversal stress protein MJ0577 / 0.725
2p9d SAHDiphthine synthase / 0.722
2owk SAHDiphthine synthase / 0.715
2egl SAHDiphthine synthase / 0.712
2ejj SAHDiphthine synthase / 0.711
2p6k SAHDiphthine synthase / 0.710
2dv4 SAHDiphthine synthase / 0.704
2pck SAHDiphthine synthase / 0.701
2p6i SAHDiphthine synthase / 0.700
2z6r SAHDiphthine synthase / 0.699
3ab8 ATPUncharacterized protein / 0.690
5ahw CMPUniversal stress protein family protein, putative / 0.676
3ab1 FADFerredoxin--NADP reductase 1.18.1.2 0.670
2zbw FADFerredoxin--NADP reductase / 0.668
1kor ANPArgininosuccinate synthase / 0.667
1ryi FADGlycine oxidase 1.4.3.19 0.667
1mxi SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.665
1cc2 FADCholesterol oxidase 1.1.3.6 0.661
3ic9 FADPutative dihydrolipoamide dehydrogenase / 0.661
3t50 FMNBlue-light-activated histidine kinase 2.7.13.3 0.661
2hma SAMtRNA-specific 2-thiouridylase MnmA / 0.659
3k4n FADPyranose 2-oxidase / 0.659
4gcm FADThioredoxin reductase 1.8.1.9 0.659
2ywl FADThioredoxin reductase related protein / 0.658
3pl8 FADPyranose 2-oxidase / 0.658
4cnf MTASpoU rRNA methylase / 0.658
2ioa ADPBifunctional glutathionylspermidine synthetase/amidase / 0.657
3vqr FADPutative oxidoreductase / 0.655
4s1h ADPPyridoxal kinase, putative / 0.654
4xw6 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.654
3gu5 ANPDeath-associated protein kinase 1 2.7.11.1 0.652
2egv SAMRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.650
3cnd FADPolyamine oxidase FMS1 / 0.650