Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4l1f COS Acyl-CoA dehydrogenase domain protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4l1f COSAcyl-CoA dehydrogenase domain protein / 1.388
1jqi CAAShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.926
1rx0 2MCIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.786
2vig COSShort-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.1 0.762
3mpi GRAGlutaryl-CoA dehydrogenase 1.3.99.32 0.734
1buc CAAAcyl-CoA dehydrogenase, short-chain specific 1.3.8.1 0.726
2ix5 CAAAcyl-coenzyme A oxidase 4, peroxisomal 1.3.3.6 0.709
1ivh COSIsovaleryl-CoA dehydrogenase, mitochondrial 1.3.8.4 0.687