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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4knm E1E Carbonic anhydrase 13 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4knm E1ECarbonic anhydrase 13 4.2.1.1 0.996
4knn E1FCarbonic anhydrase 13 4.2.1.1 0.801
3sax E50Carbonic anhydrase 2 4.2.1.1 0.784
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.765
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.749
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3l14 I7BCarbonic anhydrase 2 4.2.1.1 0.742
3m96 E38Carbonic anhydrase 2 4.2.1.1 0.742
3bl1 BL1Carbonic anhydrase 2 4.2.1.1 0.740
4kp5 E1FCarbonic anhydrase 12 4.2.1.1 0.738
4kni E1ECarbonic anhydrase 2 4.2.1.1 0.734
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.713
2weh FB1Carbonic anhydrase 2 4.2.1.1 0.712
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.711
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.708
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.705
1xq0 4TRCarbonic anhydrase 2 4.2.1.1 0.700
3myq E27Carbonic anhydrase 2 4.2.1.1 0.699
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.698
2pow I7CCarbonic anhydrase 2 4.2.1.1 0.688
4knj E1FCarbonic anhydrase 2 4.2.1.1 0.685
3mho J43Carbonic anhydrase 2 4.2.1.1 0.674
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.673
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.666
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.665
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.665
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.661
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.660
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.656
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.656
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.655
3m2y BE0Carbonic anhydrase 2 4.2.1.1 0.650