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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4kba 1QM Casein kinase I isoform delta 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4kba 1QMCasein kinase I isoform delta 2.7.11.1 1.029
4kbc 1QJCasein kinase I isoform delta 2.7.11.1 0.810
4kbk 1QGCasein kinase I isoform delta 2.7.11.1 0.784
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4kb8 1QNCasein kinase I isoform delta 2.7.11.1 0.711
3uzp 0CKCasein kinase I isoform delta 2.7.11.1 0.709
4fv7 E94Mitogen-activated protein kinase 1 2.7.11.24 0.703
3zsg T75Mitogen-activated protein kinase 14 / 0.678
3uyt 0CKCasein kinase I isoform delta 2.7.11.1 0.669
4e5f 0N7Polymerase acidic protein / 0.660
1wzy F29Mitogen-activated protein kinase 1 2.7.11.24 0.656
4k11 0J9Proto-oncogene tyrosine-protein kinase Src 2.7.10.2 0.655
3vvh 4BMDual specificity mitogen-activated protein kinase kinase 1 2.7.12.2 0.652