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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4jay FAD UDP-N-acetylenolpyruvoylglucosamine reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4jay FADUDP-N-acetylenolpyruvoylglucosamine reductase / 1.443
4jb1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 1.284
3i99 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 1.195
1hsk FADUDP-N-acetylenolpyruvoylglucosamine reductase / 1.075
3tx1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 1.052
2gqt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 1.042
1mbt FADUDP-N-acetylenolpyruvoylglucosamine reductase 1.3.1.98 1.035
4bby FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.997
4pyt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.978
4bc7 FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.966
4bca FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.914
3pm9 FADPutative oxidoreductase / 0.880
4ysw FADXanthine dehydrogenase/oxidase / 0.854
1wyg FADXanthine dehydrogenase/oxidase / 0.769
4zoh FADPutative oxidoreductase FAD-binding subunit / 0.767
4aut FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.762
4feh FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.744
2uuv FADAlkyldihydroxyacetonephosphate synthase 2.5.1.26 0.704
3f6s FMNFlavodoxin / 0.697
1akw FMNFlavodoxin / 0.689
4f4q FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.688
1ffu FADCarbon monoxide dehydrogenase medium chain / 0.681
1n9l FMNPutative blue light receptor / 0.669
3n3b FMNProtein NrdI / 0.668
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.667
5af7 FADAcyl-CoA dehydrogenase / 0.665
2yqu FADDihydrolipoyl dehydrogenase / 0.664
4fdn FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.663
1jeh FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.662
2o12 FMNChorismate synthase / 0.658
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.658
1j9g FMNFlavodoxin / 0.654
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.653
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.650