Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4iv2 1GR Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4iv2 1GREstrogen receptor / 1.230
4iw8 KN3Estrogen receptor / 0.841
4iw6 1GUEstrogen receptor / 0.820
4ivy 1GTEstrogen receptor / 0.795
4iui 1GQEstrogen receptor / 0.757
1gwq ZTWEstrogen receptor / 0.728
4e5l DBHPolymerase acidic protein / 0.712
1qkm GENEstrogen receptor beta / 0.693
2bj4 OHTEstrogen receptor / 0.678
4e5f 0N7Polymerase acidic protein / 0.663
5dxg ESTEstrogen receptor / 0.661
4e5i 0N9Polymerase acidic protein / 0.660
2pog WSTEstrogen receptor / 0.652