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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4hib 16B Uridine 5'-monophosphate synthase 4.1.1.23

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4hib 16BUridine 5'-monophosphate synthase 4.1.1.23 1.064
3l0n S5PUridine 5'-monophosphate synthase 4.1.1.23 0.857
3ewy U5PUridine 5'-monophosphate synthase 4.1.1.23 0.838
2czf XMPOrotidine 5'-phosphate decarboxylase 4.1.1.23 0.662
1n1e NDEGlycerol-3-phosphate dehydrogenase [NAD(+)], glycosomal 1.1.1.8 0.655
2vwp NDPGlucose 1-dehydrogenase / 0.654
4nt0 3DUOrotidine 5'-phosphate decarboxylase 4.1.1.23 0.652
1u5a BIKL-lactate dehydrogenase 1.1.1.27 0.651