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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gnc ASO Regucalcin 3.1.1.17

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4gnc ASORegucalcin 3.1.1.17 0.913
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3ozt OZZCatechol O-methyltransferase 2.1.1.6 0.662
5fhq DNCCatechol O-methyltransferase 2.1.1.6 0.661
4e5l DBHPolymerase acidic protein / 0.657
1kv9 PQQQuinohemoprotein alcohol dehydrogenase ADH IIB / 0.654
4okk U5P3'-5' exoribonuclease MT2234.1 / 0.654
2xwe AMFGlucosylceramidase 3.2.1.45 0.653
4gn8 ASORegucalcin 3.1.1.17 0.652