Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gfn SUY DNA gyrase subunit B

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4gfn SUYDNA gyrase subunit B / 0.965
4gee 0WTDNA gyrase subunit B / 0.933
4ggl CJCDNA gyrase subunit B / 0.912
4hxw 1A0DNA gyrase subunit B / 0.911
4ksh HTTDNA gyrase subunit B / 0.911
4e5i 0N9Polymerase acidic protein / 0.744
4hz5 19YDNA topoisomerase 4 subunit B / 0.684
4duh RLIDNA gyrase subunit B / 0.683
4e5f 0N7Polymerase acidic protein / 0.660