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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fx2 FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4fx2 FMNFlavodoxin / 1.035
1akr FMNFlavodoxin / 0.935
1azl FMNFlavodoxin / 0.898
1j8q FMNFlavodoxin / 0.897
2fx2 FMNFlavodoxin / 0.897
1xyv FMNFlavodoxin / 0.890
1wsb FMNFlavodoxin / 0.888
1akw FMNFlavodoxin / 0.882
1c7f FMNFlavodoxin / 0.879
1aku FMNFlavodoxin / 0.878
3f6s FMNFlavodoxin / 0.842
5tgz FMNCannabinoid receptor 1 / 0.826
1fx1 FMNFlavodoxin / 0.813
2v5u FMNFlavodoxin / 0.807
1czn FMNFlavodoxin / 0.804
3esz FMNFlavodoxin / 0.796
3f90 FMNFlavodoxin / 0.781
1xyy FMNFlavodoxin / 0.780
1j9g FMNFlavodoxin / 0.779
1ofv FMNFlavodoxin / 0.777
5fx2 FMNFlavodoxin / 0.773
3f6r FMNFlavodoxin / 0.744
1ahn FMNFlavodoxin 1 / 0.742
2v5v FMNFlavodoxin / 0.740
1yob FMNFlavodoxin 2 / 0.732
3esy FMNFlavodoxin / 0.732
3kap FMNFlavodoxin / 0.727
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.721
2fcr FMNFlavodoxin / 0.718
3qfr FMNNADPH--cytochrome P450 reductase / 0.715
2bf4 FMNNADPH--cytochrome P450 reductase / 0.712
5xra FMNCannabinoid receptor 1 / 0.710
4y7c FMNNADPH--cytochrome P450 reductase / 0.709
4oxx FMNCindoxin / 0.705
1ja0 FMNNADPH--cytochrome P450 reductase / 0.703
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.703
1amo FMNNADPH--cytochrome P450 reductase / 0.696
3qe2 FMNNADPH--cytochrome P450 reductase / 0.695
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.694
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.690
5xr8 FMNCannabinoid receptor 1 / 0.690
2bn4 FMNNADPH--cytochrome P450 reductase / 0.688
4yao FMNNADPH--cytochrome P450 reductase / 0.679
2ohj FMNType A flavoprotein FprA 1 0.674
4bmp FMNProtein NrdI / 0.672
4bmo FMNProtein NrdI / 0.669
2ohi FMNType A flavoprotein FprA 1 0.668
3ojx FMNNADPH--cytochrome P450 reductase / 0.667
3ojw FMNNADPH--cytochrome P450 reductase / 0.664
3n3b FMNProtein NrdI / 0.662
2q9u FMNA-type flavoprotein / 0.657
3n39 FMNProtein NrdI / 0.652
1bu5 RBFFlavodoxin / 0.651
3n3a FMNProtein NrdI / 0.650