Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fjh DGT DNA-directed DNA polymerase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4fjh DGTDNA-directed DNA polymerase / 1.160
4fj5 DTPDNA-directed DNA polymerase / 1.153
4m42 ATPDNA-directed DNA polymerase / 1.123
4fjj TTPDNA-directed DNA polymerase / 1.112
4fjm DCPDNA-directed DNA polymerase / 1.110
3ne6 DCPDNA-directed DNA polymerase / 1.109
4dtj TTPDNA-directed DNA polymerase / 1.099
4fk4 DGTDNA-directed DNA polymerase / 1.097
4dtx TTPDNA-directed DNA polymerase / 1.084
4fjl DGTDNA-directed DNA polymerase / 1.082
4dtp DGTDNA-directed DNA polymerase / 1.078
4m3t ATPDNA-directed DNA polymerase / 1.062
4m3x ATPDNA-directed DNA polymerase / 1.062
3lzj CTPDNA-directed DNA polymerase / 1.058
3sup DCPDNA-directed DNA polymerase / 1.056
4khy TTPDNA-directed DNA polymerase / 0.982
4dto DCPDNA-directed DNA polymerase / 0.909
4dtm DCPDNA-directed DNA polymerase / 0.903
4ptf DCPDNA polymerase epsilon catalytic subunit A 2.7.7.7 0.869
3g6x DGTDNA polymerase iota 2.7.7.7 0.832
4dfk 0L5DNA polymerase I, thermostable 2.7.7.7 0.774
3q23 G2PVirion DNA-directed RNA polymerase / 0.772
4rwn APC2'-5'-oligoadenylate synthase 1 2.7.7.84 0.748
4df4 0L3DNA polymerase I, thermostable 2.7.7.7 0.746
3au2 DGTDNA polymerase beta family (X family) / 0.742
4df8 0L4DNA polymerase I, thermostable 2.7.7.7 0.733
3wbz ATPtRNA(His) guanylyltransferase {ECO:0000256|PIRNR:PIRNR028980} / 0.726
4xj4 3ATCyclic GMP-AMP synthase / 0.725
1qsy DDSDNA polymerase I, thermostable 2.7.7.7 0.711
1qtm TTPDNA polymerase I, thermostable 2.7.7.7 0.703
2q66 ATPPoly(A) polymerase 2.7.7.19 0.702
1r89 CTPCCA-adding enzyme 2.7.7.72 0.695
5a2w AGSMitochondrial poly(A) polymerase / 0.691
1cjv DADAdenylate cyclase type 2 / 0.690
1cjv DADAdenylate cyclase type 5 / 0.690
4u03 GTPCyclic GMP-AMP synthase / 0.680
4xj3 GTPCyclic GMP-AMP synthase / 0.678
5c03 AGSNon-receptor tyrosine-protein kinase TYK2 2.7.10.2 0.670
2b51 UTPRNA editing complex protein MP57 / 0.669
4tl6 ANPCircadian clock protein kinase KaiC 2.7.11.1 0.667
3ftq GNPSeptin-2 / 0.666
3t3f N5PDNA polymerase I, thermostable 2.7.7.7 0.666
2jlr ANPGenome polyprotein 3.4.21.91 0.665
3w2w ATPCRISPR system Cmr subunit Cmr2 / 0.665
4idn GNPAtlastin-1 3.6.5 0.665
4idp GNPAtlastin-1 3.6.5 0.664
3m0e ATPTranscriptional regulator (NtrC family) / 0.656
4lt6 3ATPoly(A) polymerase gamma 2.7.7.19 0.655
1gir NDPIota toxin component Ia / 0.652
2jj2 ANPATP synthase subunit beta, mitochondrial 3.6.3.14 0.652
3fbc TYDNucleoside diphosphate kinase 2.7.4.6 0.651
4k97 ATPCyclic GMP-AMP synthase / 0.651
4fvq ATPTyrosine-protein kinase JAK2 / 0.650