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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fgc PQ0 NADPH-dependent 7-cyano-7-deazaguanine reductase 1.7.1.13

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4fgc PQ0NADPH-dependent 7-cyano-7-deazaguanine reductase 1.7.1.13 0.751
3rzp PRFNADPH-dependent 7-cyano-7-deazaguanine reductase / 0.694
1xdy MTEProtein-methionine-sulfoxide reductase catalytic subunit MsrP / 0.664
3rv7 RVBSalicylate synthase / 0.660
2nm2 NEUDihydroneopterin aldolase / 0.659
3uxv GUNNADPH-dependent 7-cyano-7-deazaguanine reductase / 0.658
1e1x NW1Cyclin-dependent kinase 2 2.7.11.22 0.656
3w55 1FMMitogen-activated protein kinase 1 2.7.11.24 0.655
3w5e NVWcAMP-specific 3',5'-cyclic phosphodiesterase 4B 3.1.4.53 0.653
4b4v L34Bifunctional protein FolD / 0.652
1nbu PH2Dihydroneopterin aldolase / 0.650