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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ffb GTP Tubulin alpha-1 chain

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ffb GTPTubulin alpha-1 chain / 1.298
4iij GTPTubulin alpha-1B chain / 0.919
4tuy GTPTubulin alpha-1B chain / 0.909
4tv9 GTPTubulin alpha-1B chain / 0.908
4o4l GTPTubulin alpha-1B chain / 0.888
4ihj GTPTubulin alpha-1B chain / 0.879
5itz GTPTubulin alpha-1B chain / 0.857
4wbn GTPTubulin alpha-1B chain / 0.851
5la6 GTPTubulin alpha-1B chain / 0.847
4yj2 GTPTubulin alpha-1B chain / 0.845
4zol GTPTubulin alpha-1B chain / 0.829
5jqg GTPTubulin alpha-1B chain / 0.829
4o4i GTPTubulin alpha-1B chain / 0.822
3ryh GTPTubulin alpha chain / 0.789
1z5w GTPTubulin gamma-1 chain / 0.725
4u3j GTPTubulin beta chain / 0.723
4xvu ATPATPase GET3 / 0.701
4c0b ATPmRNA cleavage and polyadenylation factor CLP1 / 0.698
5la6 GDPTubulin beta-2B chain / 0.689
1aq2 ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.685
3zid GDPTubulin-like protein CetZ / 0.685
3q9l ATPSeptum site-determining protein MinD / 0.684
1xef ATPAlpha-hemolysin translocation ATP-binding protein HlyB / 0.683
4oi4 ATPmRNA cleavage and polyadenylation factor CLP1 / 0.683
2ji9 TPWOxalyl-CoA decarboxylase 4.1.1.8 0.681
3oeh ANPATP synthase subunit alpha, mitochondrial / 0.680
4mit GTPRho-related protein racC / 0.679
4qm6 GTPMetallophosphoesterase / 0.679
2olr ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.678
4jsy GTPMetallophosphoesterase / 0.677
1cul GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.676
1z2c GNPRho-related GTP-binding protein RhoC / 0.674
3vx4 ATPPutative ABC transporter, ATP-binding protein ComA / 0.674
3wyf GTPGTP-binding nuclear protein / 0.673
4fvr ATPTyrosine-protein kinase JAK2 / 0.672
3idc ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.668
3m0e ATPTranscriptional regulator (NtrC family) / 0.668
4to6 DTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.667
1cs4 GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.665
3hiy UTPUncharacterized protein / 0.665
1ayl ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.663
4w5j AP5Adenylate kinase / 0.663
3cb2 GDPTubulin gamma-1 chain / 0.662
1mez GDPAdenylosuccinate synthetase isozyme 1 / 0.660
2j7p GNPSignal recognition particle protein / 0.660
2j7p GNPSignal recognition particle receptor FtsY / 0.660
4pao GSPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.660
3c16 GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.659
5c03 AGSNon-receptor tyrosine-protein kinase TYK2 2.7.10.2 0.655
5dac AGSUncharacterized protein / 0.655
2gil GTPRas-related protein Rab-6A / 0.654
2cls GTPRho-related GTP-binding protein Rho6 / 0.653
3wt0 ATPCell division protein FtsA / 0.653
4cbx ATPActin-2 / 0.653
4fvq ATPTyrosine-protein kinase JAK2 / 0.653
1mx0 ANPType 2 DNA topoisomerase 6 subunit B / 0.652
2hf8 GSPProbable hydrogenase nickel incorporation protein HypB / 0.652
3gon ANPPhosphomevalonate kinase / 0.652
3w3z GTPGTP-binding nuclear protein Ran / 0.652
4ncl GDPEukaryotic translation initiation factor 5B / 0.652
3th5 GNPRas-related C3 botulinum toxin substrate 1 / 0.651
4ki0 ANPMaltose/maltodextrin import ATP-binding protein MalK / 0.651
1wua ATPActin, alpha skeletal muscle / 0.650
2xul ATPNitrogen regulatory protein P-II / 0.650
4tyq AP5Adenylate kinase / 0.650