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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4feh FAD Decaprenylphosphoryl-beta-D-ribose oxidase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4feh FADDecaprenylphosphoryl-beta-D-ribose oxidase / 1.463
4fdn FADDecaprenylphosphoryl-beta-D-ribose oxidase / 1.435
4fdp FADDecaprenylphosphoryl-beta-D-ribose oxidase / 1.414
4aut FADDecaprenylphosphoryl-beta-D-ribose oxidase / 1.342
4f4q FADDecaprenylphosphoryl-beta-D-ribose oxidase / 1.288
4bc7 FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.819
2uuv FADAlkyldihydroxyacetonephosphate synthase 2.5.1.26 0.800
3tx1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.796
3i99 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.760
3pm9 FADPutative oxidoreductase / 0.748
4jay FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.744
1hsk FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.743
4jb1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.740
1mbt FADUDP-N-acetylenolpyruvoylglucosamine reductase 1.3.1.98 0.738
4bby FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.735
4bca FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.734
4pyt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.732
4zoh FADPutative oxidoreductase FAD-binding subunit / 0.728
2gqt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.713
1ffu FADCarbon monoxide dehydrogenase medium chain / 0.711
4ysw FADXanthine dehydrogenase/oxidase / 0.709
1ycf FMNNitric oxide reductase 1 0.700
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.696
3w8w FADPutative FAD-dependent oxygenase EncM / 0.671
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 0.671
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.666
1wyg FADXanthine dehydrogenase/oxidase / 0.665
3t50 FMNBlue-light-activated histidine kinase 2.7.13.3 0.656
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.655
1f0x FADD-lactate dehydrogenase 1.1.1.28 0.654
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.651