Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4eag ATP 5'-AMP-activated protein kinase subunit gamma-1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4eag ATP5'-AMP-activated protein kinase subunit gamma-1 / 1.048
3fwr ADPTranscriptional repressor CcpN / 0.683
2v92 ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.678
2ooy ATP5'-AMP-activated protein kinase subunit gamma / 0.674
4eaj ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.672
4eak ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.670
1pr0 NOSPurine nucleoside phosphorylase DeoD-type / 0.655
3hav ATPAminoglycoside phosphotransferase / 0.652