scPDB - 3fwr entry

Protein Data Bank Entry:

PDB ID : 3fwr

Resolution :2.450 Å

Experimental Method : X-ray

Deposition Date : 2009-01-19

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Transcriptional repressor CcpN
ID:	CCPN_BACSU
AC:	O34994
Organism:	Bacillus subtilis
Reign:	Bacteria
TaxID:	224308
EC Number:	/

Chains:

Chain Name:	Percentage of Residues within binding site
A	16 %
B	84 %

Ligand binding site composition:

B-Factor:	22.164
Number of residues:	32
Including
Standard Amino Acids:	31
Non Standard Amino Acids:	0
Water Molecules:	1
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.035	658.125

% Hydrophobic	% Polar
33.85	66.15
According to VolSite

Ligand :

HET Code:	ADP
Formula:	C10H12N5O10P2
Molecular weight:	424.177 g/mol
DrugBank ID:	-
Buried Surface Area:	61.91 %
Polar Surface area:	260.7 Å2

Number of
H-Bond Acceptors:	14
H-Bond Donors:	3
Rings:	3
Aromatic rings:	2
Anionic atoms:	3
Cationic atoms:	0
Rule of Five Violation:	1
Rotatable Bonds:	6

Mass center Coordinates

X	Y	Z
10.5288	50.125	41.6265

Binding mode :

What is Poseview ?

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Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
O1B	OG	SER- 125	2.61	156.09	H-Bond (Protein Donor)	false
O3B	OG	SER- 125	3.39	128.44	H-Bond (Protein Donor)	false
O3A	OG	SER- 125	3.09	122.84	H-Bond (Protein Donor)	false
C2'	CB	SER- 125	4.05	0	Hydrophobic	false
O3B	CZ	ARG- 126	3.69	0	Ionic (Protein Cationic)	false
O3B	N	LYS- 127	3.15	148.95	H-Bond (Protein Donor)	false
O3'	OD1	ASP- 128	2.56	167.22	H-Bond (Ligand Donor)	false
O2'	OD2	ASP- 128	2.52	169.86	H-Bond (Ligand Donor)	false
O2'	OD1	ASP- 128	3.34	131.64	H-Bond (Ligand Donor)	false
O2'	OG1	THR- 149	2.66	164.87	H-Bond (Protein Donor)	false
C1'	CG2	THR- 149	4.37	0	Hydrophobic	false
N6	O	THR- 155	3.31	176.16	H-Bond (Ligand Donor)	false
N1	N	THR- 155	2.98	167.71	H-Bond (Protein Donor)	false
C5'	CG2	ILE- 175	4.42	0	Hydrophobic	false
C1'	CG2	ILE- 175	4.29	0	Hydrophobic	false
O1A	N	ASP- 176	3.18	161.21	H-Bond (Protein Donor)	false
N6	O	ALA- 177	2.94	149.55	H-Bond (Ligand Donor)	false
N7	O	HOH- 229	2.94	159.2	H-Bond (Protein Donor)	false