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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dma 0L8 Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4dma 0L8Estrogen receptor / 1.073
4zn7 DESEstrogen receptor / 0.774
3erd DESEstrogen receptor / 0.740
4pp6 STLEstrogen receptor / 0.700
1x76 697Estrogen receptor beta / 0.698
2nv7 555Estrogen receptor beta / 0.691
1qkm GENEstrogen receptor beta / 0.687
4e5l DBHPolymerase acidic protein / 0.669
1u9e 397Estrogen receptor beta / 0.668
4iu7 1GMEstrogen receptor / 0.665
1gwq ZTWEstrogen receptor / 0.661
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
1s9p DESEstrogen-related receptor gamma / 0.659
1gwr ESTEstrogen receptor / 0.657
3uud ESTEstrogen receptor / 0.655
4e5f 0N7Polymerase acidic protein / 0.652