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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4d9t 0JG Ribosomal protein S6 kinase alpha-3 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4d9t 0JGRibosomal protein S6 kinase alpha-3 2.7.11.1 1.026
2ivv PP1Proto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.726
2c0t L3GTyrosine-protein kinase HCK 2.7.10.2 0.706
3vry B43Tyrosine-protein kinase HCK 2.7.10.2 0.698
3vs3 VSETyrosine-protein kinase HCK 2.7.10.2 0.691
3vs4 VSFTyrosine-protein kinase HCK 2.7.10.2 0.676
4hnf 16WCasein kinase I isoform delta 2.7.11.1 0.673
5f0a 1FBcGMP-dependent protein kinase, putative / 0.663
3uyt 0CKCasein kinase I isoform delta 2.7.11.1 0.656
3mwu BK3Calmodulin-domain protein kinase 1, putative / 0.652
5ar4 SB2Receptor-interacting serine/threonine-protein kinase 2 2.7.11.1 0.652
2bal PQAMitogen-activated protein kinase 14 / 0.651