2.600 Å
X-ray
2015-11-27
| Name: | cGMP-dependent protein kinase, putative |
|---|---|
| ID: | A5K0N4_PLAVS |
| AC: | A5K0N4 |
| Organism: | Plasmodium vivax |
| Reign: | Eukaryota |
| TaxID: | 126793 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 79.234 |
|---|---|
| Number of residues: | 30 |
| Including | |
| Standard Amino Acids: | 30 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.978 | 506.250 |
| % Hydrophobic | % Polar |
|---|---|
| 56.67 | 43.33 |
| According to VolSite | |

| HET Code: | 1FB |
|---|---|
| Formula: | C15H16ClN5O |
| Molecular weight: | 317.773 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 65.55 % |
| Polar Surface area: | 78.85 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 5 |
| H-Bond Donors: | 1 |
| Rings: | 3 |
| Aromatic rings: | 3 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| -25.6691 | 69.7748 | 30.4342 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CAA | CB | VAL- 548 | 3.98 | 0 | Hydrophobic |
| CAH | CG1 | VAL- 548 | 3.99 | 0 | Hydrophobic |
| C5 | CB | ALA- 561 | 4.39 | 0 | Hydrophobic |
| CAH | CB | ALA- 561 | 3.76 | 0 | Hydrophobic |
| CL1 | CD | LYS- 563 | 4.13 | 0 | Hydrophobic |
| CAG | CB | LYS- 563 | 3.39 | 0 | Hydrophobic |
| CL1 | CG2 | THR- 586 | 4.12 | 0 | Hydrophobic |
| CL1 | CB | PHE- 609 | 3.5 | 0 | Hydrophobic |
| CAO | CG2 | THR- 611 | 3.45 | 0 | Hydrophobic |
| CAG | CG2 | THR- 611 | 3.36 | 0 | Hydrophobic |
| NAD | O | GLU- 612 | 2.85 | 149.36 | H-Bond (Ligand Donor) |
| N1 | N | VAL- 614 | 3.08 | 167.09 | H-Bond (Protein Donor) |
| CAB | CD2 | LEU- 664 | 4.3 | 0 | Hydrophobic |
| CAC | CD2 | LEU- 664 | 4.44 | 0 | Hydrophobic |
| C5 | CD1 | LEU- 664 | 3.44 | 0 | Hydrophobic |
| CAC | CD1 | ILE- 674 | 3.83 | 0 | Hydrophobic |