2.600 Å
X-ray
2015-11-27
Name: | cGMP-dependent protein kinase, putative |
---|---|
ID: | A5K0N4_PLAVS |
AC: | A5K0N4 |
Organism: | Plasmodium vivax |
Reign: | Eukaryota |
TaxID: | 126793 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 79.234 |
---|---|
Number of residues: | 30 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.978 | 506.250 |
% Hydrophobic | % Polar |
---|---|
56.67 | 43.33 |
According to VolSite |
HET Code: | 1FB |
---|---|
Formula: | C15H16ClN5O |
Molecular weight: | 317.773 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 65.55 % |
Polar Surface area: | 78.85 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 1 |
Rings: | 3 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
-25.6691 | 69.7748 | 30.4342 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CAA | CB | VAL- 548 | 3.98 | 0 | Hydrophobic |
CAH | CG1 | VAL- 548 | 3.99 | 0 | Hydrophobic |
C5 | CB | ALA- 561 | 4.39 | 0 | Hydrophobic |
CAH | CB | ALA- 561 | 3.76 | 0 | Hydrophobic |
CL1 | CD | LYS- 563 | 4.13 | 0 | Hydrophobic |
CAG | CB | LYS- 563 | 3.39 | 0 | Hydrophobic |
CL1 | CG2 | THR- 586 | 4.12 | 0 | Hydrophobic |
CL1 | CB | PHE- 609 | 3.5 | 0 | Hydrophobic |
CAO | CG2 | THR- 611 | 3.45 | 0 | Hydrophobic |
CAG | CG2 | THR- 611 | 3.36 | 0 | Hydrophobic |
NAD | O | GLU- 612 | 2.85 | 149.36 | H-Bond (Ligand Donor) |
N1 | N | VAL- 614 | 3.08 | 167.09 | H-Bond (Protein Donor) |
CAB | CD2 | LEU- 664 | 4.3 | 0 | Hydrophobic |
CAC | CD2 | LEU- 664 | 4.44 | 0 | Hydrophobic |
C5 | CD1 | LEU- 664 | 3.44 | 0 | Hydrophobic |
CAC | CD1 | ILE- 674 | 3.83 | 0 | Hydrophobic |