sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4cry | ACO | PanD regulatory factor |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4cry | ACO | PanD regulatory factor | / | 1.381 | |
| 4crz | ACO | PanD regulatory factor | / | 1.349 | |
| 4cs0 | ACO | PanD regulatory factor | / | 1.319 | |
| 4r3k | COA | N-alpha-acetyltransferase | 2.3.1 | 0.809 | |
| 1s5k | COA | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.806 | |
| 2jdc | CAO | Probable acetyltransferase | / | 0.804 | |
| 2c27 | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.802 | |
| 2cnt | COA | Ribosomal-protein-alanine acetyltransferase | / | 0.780 | |
| 1p0h | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.770 | |
| 4u9v | ACO | N-alpha-acetyltransferase 40 | 2.3.1 | 0.768 | |
| 2psw | COA | N-alpha-acetyltransferase 50 | / | 0.766 | |
| 4mxe | ACO | N-acetyltransferase ESCO1 | 2.3.1 | 0.764 | |
| 4lx9 | ACO | N-alpha-acetyltransferase | 2.3.1 | 0.753 | |
| 4gs4 | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.749 | |
| 4b5p | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.748 | |
| 1n71 | COA | Aac(6')-Ii protein | / | 0.746 | |
| 3vwe | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.746 | |
| 1ghe | ACO | Acetyltransferase | 2.3.1 | 0.744 | |
| 3s6f | COA | Uncharacterized protein | / | 0.742 | |
| 1i12 | ACO | Glucosamine 6-phosphate N-acetyltransferase | / | 0.741 | |
| 5kf9 | ACO | Predicted acetyltransferase | / | 0.738 | |
| 4ag7 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.737 | |
| 1m4i | COA | Aminoglycoside 2'-N-acetyltransferase | 2.3.1 | 0.727 | |
| 4xpd | ACO | N-terminal acetyltransferase A complex subunit NAT5 | 2.3.1 | 0.722 | |
| 2vbq | BSJ | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.721 | |
| 2cy2 | ACO | Probable acetyltransferase | / | 0.708 | |
| 2vxk | COA | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.708 | |
| 2giv | ACO | Histone acetyltransferase KAT8 | / | 0.705 | |
| 4qvt | ACO | Acetyltransferase YpeA | 2.3.1 | 0.705 | |
| 1s3z | COA | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.701 | |
| 2zpa | ACO | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.700 | |
| 4if5 | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.699 | |
| 2rc4 | ACO | Histone acetyltransferase KAT6A | / | 0.698 | |
| 2ob0 | ACO | N-alpha-acetyltransferase 50 | / | 0.695 | |
| 4ava | ACO | Acetyltransferase Pat | 2.3.1 | 0.694 | |
| 2ou2 | ACO | Histone acetyltransferase KAT5 | / | 0.691 | |
| 5c88 | COA | N-alpha-acetyltransferase | / | 0.691 | |
| 3d2m | COA | Amino-acid acetyltransferase | / | 0.689 | |
| 3vwd | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.688 | |
| 1qsr | ACO | HAT A1 | / | 0.682 | |
| 2y0m | ACO | Histone acetyltransferase KAT8 | / | 0.681 | |
| 1pua | COA | HAT A1 | / | 0.678 | |
| 3gya | COA | GCN5-related N-acetyltransferase | / | 0.677 | |
| 1mj9 | COA | Histone acetyltransferase ESA1 | / | 0.673 | |
| 1kuv | CA5 | Serotonin N-acetyltransferase | / | 0.671 | |
| 1j4j | ACO | Acetyltransferase | 2.3.1 | 0.670 | |
| 3tfy | COA | N-alpha-acetyltransferase 50 | 2.3.1 | 0.665 | |
| 3gy9 | COA | GCN5-related N-acetyltransferase | / | 0.663 | |
| 3mgd | ACO | Predicted acetyltransferase | / | 0.660 | |
| 5kf2 | COA | Predicted acetyltransferase | / | 0.659 | |
| 5h86 | BCO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.658 | |
| 4c2y | MYA | Glycylpeptide N-tetradecanoyltransferase 1 | / | 0.657 | |
| 4kvx | ACO | N-terminal acetyltransferase A complex catalytic subunit ard1 | 2.3.1.88 | 0.656 | |
| 1bo4 | COA | Aminoglycoside-(3)-N-acetyltransferase | / | 0.654 | |
| 5h84 | 1VU | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.654 | |
| 1z4r | ACO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.652 | |
| 4zm6 | ACO | N-acetyl-beta-D glucosaminidase | / | 0.652 | |
| 4u9y | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.651 |