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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4bc7 FAD Alkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4bc7 FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 1.493
4bby FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 1.391
4bca FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 1.361
2uuv FADAlkyldihydroxyacetonephosphate synthase 2.5.1.26 1.045
4jay FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.966
4jb1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.907
3tx1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.885
2gqt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.874
3pm9 FADPutative oxidoreductase / 0.872
1hsk FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.864
1f0x FADD-lactate dehydrogenase 1.1.1.28 0.850
1mbt FADUDP-N-acetylenolpyruvoylglucosamine reductase 1.3.1.98 0.836
4zoh FADPutative oxidoreductase FAD-binding subunit / 0.835
4feh FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.819
4pyt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.811
3i99 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.810
4fdp FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.805
4aut FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.796
4ysw FADXanthine dehydrogenase/oxidase / 0.777
1wyg FADXanthine dehydrogenase/oxidase / 0.752
4fdn FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.749
4f4q FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.724
1ffu FADCarbon monoxide dehydrogenase medium chain / 0.721
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.687
1z41 FMNNADPH dehydrogenase / 0.686
3aty FMNProstaglandin F2a synthase / 0.685
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 0.684
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.684
4rnv FMNNADPH dehydrogenase 1 1.6.99.1 0.682
1ics FMN12-oxophytodienoate reductase 1 1.3.1.42 0.681
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.674
4k7y FMNNADPH dehydrogenase 1 1.6.99.1 0.667
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 0.667
1vhn FMNtRNA-dihydrouridine synthase / 0.666
4b5n FMNNAD(P)H:flavin oxidoreductase Sye4 / 0.665
2j08 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.664
3hgr FMN12-oxophytodienoate reductase 1 1.3.1.42 0.664
4e2b FMNDehydrogenase / 0.664
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 0.664
4jic FMNGTN Reductase / 0.663
1iqr FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.662
1yrx FMNAppA protein / 0.661
4i6g FADCryptochrome-2 / 0.661
1qnf FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.660
3p84 FMNPentaerythritol tetranitrate reductase / 0.658
3p8j FMNPentaerythritol tetranitrate reductase / 0.658
2wq6 FADRE11660p / 0.657
3p62 FMNPentaerythritol tetranitrate reductase / 0.657
3p67 FMNPentaerythritol tetranitrate reductase / 0.657
1own FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.656
1owo FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.656
1tez FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.655
1h51 FMNPentaerythritol tetranitrate reductase / 0.654
1vyr FMNPentaerythritol tetranitrate reductase / 0.654
4h4q FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.654
1djq FMNTrimethylamine dehydrogenase 1.5.8.2 0.653
1h50 FMNPentaerythritol tetranitrate reductase / 0.652