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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4bb3 KKA Isopenicillin N synthase 1.21.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4bb3 KKAIsopenicillin N synthase 1.21.3.1 0.978
3zku HCVIsopenicillin N synthase 1.21.3.1 0.770
1uzw CDHIsopenicillin N synthase 1.21.3.1 0.769
2jb4 A14Isopenicillin N synthase 1.21.3.1 0.759
2vbp VB1Isopenicillin N synthase 1.21.3.1 0.759
2ivi ACWIsopenicillin N synthase 1.21.3.1 0.754
2y60 M8FIsopenicillin N synthase 1.21.3.1 0.750
2bu9 HFVIsopenicillin N synthase 1.21.3.1 0.748
1bk0 ACVIsopenicillin N synthase 1.21.3.1 0.747
1odn APVIsopenicillin N synthase 1.21.3.1 0.747
1qiq ACCIsopenicillin N synthase 1.21.3.1 0.745
2bjs ACVIsopenicillin N synthase 1.21.3.1 0.729
3zoi M2WIsopenicillin N synthase 1.21.3.1 0.729
1blz ACVIsopenicillin N synthase 1.21.3.1 0.720
1qjf ACSIsopenicillin N synthase 1.21.3.1 0.715
1oc1 ASVIsopenicillin N synthase 1.21.3.1 0.712
2vcm M11Isopenicillin N synthase 1.21.3.1 0.709
2vbd V10Isopenicillin N synthase 1.21.3.1 0.702
1hb3 SCVIsopenicillin N synthase 1.21.3.1 0.701
1obn ASVIsopenicillin N synthase 1.21.3.1 0.699
1hb1 OCVIsopenicillin N synthase 1.21.3.1 0.696
1qmf KEFPenicillin-binding protein 2x / 0.694
2y6f M9FIsopenicillin N synthase 1.21.3.1 0.685
2wo7 ASVIsopenicillin N synthase 1.21.3.1 0.683
2tpl HPPTyrosine phenol-lyase 4.1.99.2 0.675
1e26 GPBDihydrofolate reductase 1.5.1.3 0.670
3q7d NPXProstaglandin G/H synthase 2 1.14.99.1 0.670
1w06 W05Isopenicillin N synthase 1.21.3.1 0.664
4kov KOVUncharacterized protein / 0.661
1dyh DZFDihydrofolate reductase 1.5.1.3 0.659
3t7s SAMUncharacterized protein / 0.659
1hfr MOTDihydrofolate reductase 1.5.1.3 0.657
4bqy FNTEgl nine homolog 1 / 0.656
4isu IKMGlutamate receptor 2 / 0.654
2drc MTXDihydrofolate reductase 1.5.1.3 0.653
5ccc DDFDihydrofolate reductase 1.5.1.3 0.652
1dhf FOLDihydrofolate reductase 1.5.1.3 0.651