2.300 Å
X-ray
2013-01-17
Name: | Glutamate receptor 2 |
---|---|
ID: | GRIA2_RAT |
AC: | P19491 |
Organism: | Rattus norvegicus |
Reign: | Eukaryota |
TaxID: | 10116 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 18.154 |
---|---|
Number of residues: | 25 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | CL |
Ligandability | Volume (Å3) |
---|---|
0.330 | 641.250 |
% Hydrophobic | % Polar |
---|---|
40.53 | 59.47 |
According to VolSite |
HET Code: | IKM |
---|---|
Formula: | C12H13N2O6 |
Molecular weight: | 281.241 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 59.59 % |
Polar Surface area: | 135.19 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 2 |
Rings: | 3 |
Aromatic rings: | 0 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
-23.6488 | 62.0408 | 49.9375 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5 | CE2 | TYR- 61 | 3.8 | 0 | Hydrophobic |
N2 | O | PRO- 89 | 3.12 | 141.83 | H-Bond (Ligand Donor) |
O6 | N | THR- 91 | 2.93 | 163.96 | H-Bond (Protein Donor) |
O6 | OG1 | THR- 91 | 2.89 | 148.26 | H-Bond (Protein Donor) |
O3 | NH2 | ARG- 96 | 2.72 | 134.46 | H-Bond (Protein Donor) |
O6 | NH1 | ARG- 96 | 2.96 | 141.56 | H-Bond (Protein Donor) |
O3 | CZ | ARG- 96 | 3.59 | 0 | Ionic (Protein Cationic) |
O6 | CZ | ARG- 96 | 3.65 | 0 | Ionic (Protein Cationic) |
O4 | N | SER- 142 | 2.66 | 141.83 | H-Bond (Protein Donor) |
C8 | CG | GLU- 193 | 4.34 | 0 | Hydrophobic |
N1 | OE1 | GLU- 193 | 3 | 161.89 | H-Bond (Ligand Donor) |
N1 | OE2 | GLU- 193 | 2.72 | 131.6 | H-Bond (Ligand Donor) |
N1 | OE1 | GLU- 193 | 3 | 0 | Ionic (Ligand Cationic) |
N1 | OE2 | GLU- 193 | 2.72 | 0 | Ionic (Ligand Cationic) |