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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4b5p ACO Alpha-tubulin N-acetyltransferase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4b5p ACOAlpha-tubulin N-acetyltransferase 1 / 1.524
4if5 ACOAlpha-tubulin N-acetyltransferase 1 / 1.421
4b5o ACOAlpha-tubulin N-acetyltransferase 1 / 1.399
3vwd ACOAlpha-tubulin N-acetyltransferase 1 / 1.385
4u9y COAAlpha-tubulin N-acetyltransferase 1 / 1.323
4gs4 ACOAlpha-tubulin N-acetyltransferase 1 / 1.276
3vwe COAAlpha-tubulin N-acetyltransferase 1 / 1.202
4u9z COAAlpha-tubulin N-acetyltransferase 1 / 1.106
4h6u ACOAlpha-tubulin N-acetyltransferase 1 / 0.963
4hkf ACOAlpha-tubulin N-acetyltransferase 1 / 0.862
5kf9 ACOPredicted acetyltransferase / 0.824
4h6z ACOAlpha-tubulin N-acetyltransferase 1 / 0.817
5kf8 ACOPredicted acetyltransferase / 0.805
5kgp ACOPredicted acetyltransferase / 0.797
2cy2 ACOProbable acetyltransferase / 0.795
5kf2 ACOPredicted acetyltransferase / 0.789
5kgj ACOPredicted acetyltransferase / 0.788
3exn ACOProbable acetyltransferase / 0.762
3to6 LYS_CMCHistone acetyltransferase ESA1 / 0.762
3k9u ACOSpermidine N(1)-acetyltransferase / 0.753
4cry ACOPanD regulatory factor / 0.748
1bo4 COAAminoglycoside-(3)-N-acetyltransferase / 0.740
2bsw CAOProbable acetyltransferase / 0.734
4crz ACOPanD regulatory factor / 0.733
1mja COAHistone acetyltransferase ESA1 / 0.724
4cs0 ACOPanD regulatory factor / 0.724
3f0a ACOSpermidine N(1)-acetyltransferase / 0.721
1z4r ACOHistone acetyltransferase KAT2A 2.3.1.48 0.719
5kf1 ACOPredicted acetyltransferase / 0.719
3mgd ACOPredicted acetyltransferase / 0.713
1mj9 COAHistone acetyltransferase ESA1 / 0.711
1mjb ACOHistone acetyltransferase ESA1 / 0.704
3pgp ACOUncharacterized protein / 0.701
4u9v ACON-alpha-acetyltransferase 40 2.3.1 0.700
2giv ACOHistone acetyltransferase KAT8 / 0.696
1i12 ACOGlucosamine 6-phosphate N-acetyltransferase / 0.688
3gya COAGCN5-related N-acetyltransferase / 0.687
1fy7 COAHistone acetyltransferase ESA1 / 0.685
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.685
2ou2 ACOHistone acetyltransferase KAT5 / 0.683
2rc4 ACOHistone acetyltransferase KAT6A / 0.683
1tiq COASpermidine/spermine N(1)-acetyltransferase / 0.682
2b3v ACODiamine acetyltransferase 1 / 0.677
2ozu ACOHistone acetyltransferase KAT6A / 0.676
1qsm ACOHistone acetyltransferase HPA2 / 0.675
2fiw ACOGCN5-related N-acetyltransferase:Aminotransferase, class-II / 0.675
3cz7 ACOHistone acetyltransferase RTT109 2.3.1.48 0.668
5c88 COAN-alpha-acetyltransferase / 0.664
2r8v ACOAmino-acid acetyltransferase / 0.659
3te4 ACODopamine N-acetyltransferase / 0.656
4kub COAUncharacterized protein / 0.653
2psw COAN-alpha-acetyltransferase 50 / 0.651