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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4b45 GSP Tubulin-like protein CetZ2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4b45 GSPTubulin-like protein CetZ2 / 1.142
3ryh GTPTubulin alpha chain / 0.813
4o4l GTPTubulin alpha-1B chain / 0.802
5la6 GDPTubulin beta-2B chain / 0.799
4f6r GDPTubulin beta chain / 0.787
4zol GTPTubulin alpha-1B chain / 0.787
5jqg GTPTubulin alpha-1B chain / 0.771
3cb2 GDPTubulin gamma-1 chain / 0.768
4tv9 GTPTubulin alpha-1B chain / 0.768
4ihj GTPTubulin alpha-1B chain / 0.756
5la6 GTPTubulin alpha-1B chain / 0.753
3zid GDPTubulin-like protein CetZ / 0.752
4wbn GTPTubulin alpha-1B chain / 0.751
4o4i GTPTubulin alpha-1B chain / 0.743
5itz GTPTubulin alpha-1B chain / 0.734
1w5b GTPCell division protein FtsZ 1 / 0.721
1w5a GTPCell division protein FtsZ 1 / 0.720
2r6r GDPCell division protein FtsZ / 0.708
4tuy GTPTubulin alpha-1B chain / 0.704
1z5v GSPTubulin gamma-1 chain / 0.700
4ei7 GDPPlasmid replication protein RepX / 0.696
4iij GTPTubulin alpha-1B chain / 0.686
4u3j GTPTubulin beta chain / 0.683
1z5w GTPTubulin gamma-1 chain / 0.679
4kwe GDPCell division protein FtsZ / 0.654
3ggo NAIPrephenate dehydrogenase / 0.653
1n3s GTPGTP cyclohydrolase 1 3.5.4.16 0.651
3vo8 GDPCell division protein FtsZ / 0.651