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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4aoi 4K0 Hepatocyte growth factor receptor 2.7.10.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4aoi 4K0Hepatocyte growth factor receptor 2.7.10.1 0.943
3zbx 6XEHepatocyte growth factor receptor 2.7.10.1 0.702
4ap7 F47Hepatocyte growth factor receptor 2.7.10.1 0.702
3zxz KRWHepatocyte growth factor receptor 2.7.10.1 0.697
4bid IE8Mitogen-activated protein kinase kinase kinase 5 2.7.11.25 0.686
3cqw CQWRAC-alpha serine/threonine-protein kinase 2.7.11.1 0.674
3zls 92PDual specificity mitogen-activated protein kinase kinase 1 2.7.12.2 0.664
3mvj XFEcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.652
3mv5 XFERAC-alpha serine/threonine-protein kinase 2.7.11.1 0.650