2.500 Å
X-ray
2013-02-04
| Name: | Dual specificity mitogen-activated protein kinase kinase 1 |
|---|---|
| ID: | MP2K1_HUMAN |
| AC: | Q02750 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 2.7.12.2 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 46.838 |
|---|---|
| Number of residues: | 26 |
| Including | |
| Standard Amino Acids: | 25 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | NA |
| Ligandability | Volume (Å3) |
|---|---|
| 0.899 | 347.625 |
| % Hydrophobic | % Polar |
|---|---|
| 56.31 | 43.69 |
| According to VolSite | |

| HET Code: | 92P |
|---|---|
| Formula: | C9H8N2O2 |
| Molecular weight: | 176.172 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 71.1 % |
| Polar Surface area: | 54.98 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 3 |
| H-Bond Donors: | 1 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 2 |
| X | Y | Z |
|---|---|---|
| -19.5818 | 29.2355 | -2.82969 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C1 | CD1 | LEU- 74 | 3.66 | 0 | Hydrophobic |
| C13 | CG2 | VAL- 82 | 4.44 | 0 | Hydrophobic |
| C8 | CG1 | VAL- 82 | 4.28 | 0 | Hydrophobic |
| C8 | CB | ALA- 95 | 4.08 | 0 | Hydrophobic |
| C13 | CD | LYS- 97 | 4.23 | 0 | Hydrophobic |
| C13 | SD | MET- 143 | 3.89 | 0 | Hydrophobic |
| N5 | O | GLU- 144 | 2.69 | 169.03 | H-Bond (Ligand Donor) |
| N3 | N | MET- 146 | 2.84 | 170.46 | H-Bond (Protein Donor) |
| C8 | CD1 | LEU- 197 | 3.71 | 0 | Hydrophobic |
| C4 | CD2 | LEU- 197 | 3.91 | 0 | Hydrophobic |
| C13 | SG | CYS- 207 | 3.87 | 0 | Hydrophobic |