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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4aff ATP Nitrogen regulatory protein P-II

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4aff ATPNitrogen regulatory protein P-II / 0.993
2xul ATPNitrogen regulatory protein P-II / 0.922
3mhy ATPNitrogen regulatory protein P-II 1 / 0.864
3ta2 ATPNitrogen regulatory protein P-II (GlnB-3) / 0.760
4usj ATPNitrogen regulatory protein PII / 0.736
3n0z 3ATAdenylate cyclase 2 / 0.705
1v3s ATPSignaling protein / 0.698
4fvq ATPTyrosine-protein kinase JAK2 / 0.693
3tso GNPRas-related protein Rab-25 / 0.671
4ki0 ANPMaltose/maltodextrin import ATP-binding protein MalK / 0.667
3n0y APCAdenylate cyclase 2 / 0.663
4rwn APC2'-5'-oligoadenylate synthase 1 2.7.7.84 0.662
4ko8 AGSTransitional endoplasmic reticulum ATPase 3.6.4.6 0.660
3hu3 AGSTransitional endoplasmic reticulum ATPase 3.6.4.6 0.659
3vpb ADPGlutamate--LysW ligase ArgX 6.3.2 0.657
3e5h GNPRas-related protein Rab-28 / 0.655
2pz8 APCNH(3)-dependent NAD(+) synthetase / 0.654
3bc1 GNPRas-related protein Rab-27A / 0.653
4bri UNPEctonucleoside triphosphate diphosphohydrolase I / 0.653
1ih8 APCNH(3)-dependent NAD(+) synthetase 6.3.1.5 0.652
3r9x GNPGTPase Era / 0.651
4dem YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.650
4dso GSPGTPase KRas / 0.650