2.850 Å
X-ray
2014-07-08
| Name: | Nitrogen regulatory protein PII |
|---|---|
| ID: | A8JI83_CHLRE |
| AC: | A8JI83 |
| Organism: | Chlamydomonas reinhardtii |
| Reign: | Eukaryota |
| TaxID: | 3055 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 100 % |
| B-Factor: | 52.843 |
|---|---|
| Number of residues: | 22 |
| Including | |
| Standard Amino Acids: | 21 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.092 | 273.375 |
| % Hydrophobic | % Polar |
|---|---|
| 60.49 | 39.51 |
| According to VolSite | |

| HET Code: | ATP |
|---|---|
| Formula: | C10H12N5O13P3 |
| Molecular weight: | 503.149 g/mol |
| DrugBank ID: | DB00171 |
| Buried Surface Area: | 48.82 % |
| Polar Surface area: | 319.88 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 17 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 85.2872 | 92.1549 | 70.7897 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C4' | CG2 | ILE- 24 | 3.78 | 0 | Hydrophobic |
| C1' | CG2 | ILE- 24 | 4.12 | 0 | Hydrophobic |
| O1G | N | GLY- 105 | 2.96 | 162.69 | H-Bond (Protein Donor) |
| O1A | N | GLY- 107 | 2.78 | 135.45 | H-Bond (Protein Donor) |
| O1B | NZ | LYS- 108 | 3.29 | 0 | Ionic (Protein Cationic) |
| N7 | NZ | LYS- 108 | 3.21 | 158.46 | H-Bond (Protein Donor) |
| O1G | MG | MG- 302 | 2.2 | 0 | Metal Acceptor |
| O2B | MG | MG- 302 | 1.96 | 0 | Metal Acceptor |
| O2A | MG | MG- 302 | 2.04 | 0 | Metal Acceptor |