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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4a9m P9M Bromodomain-containing protein 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4a9m P9MBromodomain-containing protein 2 / 1.042
3zyu 1GHBromodomain-containing protein 4 / 0.774
4bw4 9B6Bromodomain-containing protein 4 / 0.767
4bw3 9BMBromodomain-containing protein 4 / 0.759
4akn S5BBromodomain-containing protein 2 / 0.723
4uyg 73BBromodomain-containing protein 2 / 0.703
2ydw WSHBromodomain-containing protein 2 / 0.700
4bjx 73BBromodomain-containing protein 4 / 0.694
2yel WSHBromodomain-containing protein 4 / 0.681
4a9n A9NBromodomain-containing protein 2 / 0.680
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.660
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2puc GUNHTH-type transcriptional repressor PurR / 0.660
4e5i 0N9Polymerase acidic protein / 0.660
4e5l DBHPolymerase acidic protein / 0.660
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.660
5bt5 2LOBromodomain-containing protein 2 / 0.653