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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4a6a TTP dCTP deaminase 3.5.4.13

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4a6a TTPdCTP deaminase 3.5.4.13 1.303
2v9x DUTdCTP deaminase / 1.000
4xjc TTPdCTP deaminase / 0.925
2qxx TTPdCTP deaminase 3.5.4.13 0.883
2hxd DUPdCTP deaminase, dUMP-forming 3.5.4.30 0.860
1xs4 DCPdCTP deaminase / 0.770
4wrk DUPDUTPase / 0.762
4gv8 DUPDUTPase / 0.728
2we3 DUTDeoxyuridine 5'-triphosphate nucleotidohydrolase / 0.717
4fvq ATPTyrosine-protein kinase JAK2 / 0.701
2ol0 DUDDUTP pyrophosphatase / 0.692
1snf UMPDeoxyuridine 5'-triphosphate nucleotidohydrolase 3.6.1.23 0.684
2a84 ATPPantothenate synthetase 6.3.2.1 0.664
3zcb ATPAdenosine monophosphate-protein transferase VbhT 2.7.7.n1 0.663
2q0d ATPPoly(A) polymerase, putative / 0.662
4kh0 ATPAspartate carbamoyltransferase regulatory chain {ECO:0000256|HAMAP-Rule:MF_00002} / 0.662
2oke DUPDUTP pyrophosphatase / 0.660
2wgh DTPRibonucleoside-diphosphate reductase large subunit 1.17.4.1 0.657
1cjv DADAdenylate cyclase type 2 / 0.656
1cjv DADAdenylate cyclase type 5 / 0.656
1n75 ATPGlutamate--tRNA ligase 6.1.1.17 0.656
1kp8 AGS60 kDa chaperonin / 0.655
1n2e APCPantothenate synthetase 6.3.2.1 0.655
4fvr ATPTyrosine-protein kinase JAK2 / 0.654
3hiy UTPUncharacterized protein / 0.651