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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3wqu ATP Cell division protein FtsA

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3wqu ATPCell division protein FtsA / 0.937
3wt0 ATPCell division protein FtsA / 0.784
3wqt ANPCell division protein FtsA / 0.763
1yxq ATPActin, alpha skeletal muscle / 0.733
1kxp ATPActin, alpha skeletal muscle / 0.707
3a5m ATPMajor actin / 0.706
4b1v ATPActin, alpha skeletal muscle / 0.695
2q36 ATPActin, alpha skeletal muscle / 0.679
3orl AGSSerine/threonine protein kinase / 0.677
2a84 ATPPantothenate synthetase 6.3.2.1 0.675
1nm1 ATPMajor actin / 0.674
2a41 ATPActin, alpha skeletal muscle / 0.669
4jhd ANPActin-5C / 0.666
3m1f ATPActin, alpha skeletal muscle / 0.664
4k41 ATPActin, alpha skeletal muscle / 0.663
1t44 ATPActin, alpha skeletal muscle / 0.660
4brd ANPEctonucleoside triphosphate diphosphohydrolase I / 0.660
2v51 ATPActin, alpha skeletal muscle / 0.659
3ruq ADPChaperonin / 0.658
4a62 ANPPlasmid segregation protein ParM / 0.658
1lot ATPActin, alpha skeletal muscle / 0.657
1qz5 ATPActin, alpha skeletal muscle / 0.657
4pkg ATPActin, alpha skeletal muscle / 0.657
1wua ATPActin, alpha skeletal muscle / 0.654
3ryh GTPTubulin alpha chain / 0.654
4pki ATPActin, alpha skeletal muscle / 0.652
1c0f ATPMajor actin / 0.651
1s22 ATPActin, alpha skeletal muscle / 0.651
4yj2 GTPTubulin alpha-1B chain / 0.651
2w02 ATPAcsD / 0.650