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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3w2u ROU Dihydroorotate dehydrogenase (fumarate) 1.3.98.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3w2u ROUDihydroorotate dehydrogenase (fumarate) 1.3.98.1 1.100
3w1t WRODihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.952
3w2j QRODihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.853
3w1r MRODihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.843
3w3o ROEDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.823
3w1x XRODihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.811
3w23 3RODihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.810
3w2l VRODihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.794
3gz3 ORODihydroorotate dehydrogenase (fumarate) / 0.778
5fi8 ORODihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.710
3w2n RODDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.675