2.320 Å
X-ray
2015-12-22
Name: | Dihydroorotate dehydrogenase (quinone), mitochondrial |
---|---|
ID: | PYRD_PLAF7 |
AC: | Q08210 |
Organism: | Plasmodium falciparum |
Reign: | Eukaryota |
TaxID: | 36329 |
EC Number: | 1.3.5.2 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 34.835 |
---|---|
Number of residues: | 21 |
Including | |
Standard Amino Acids: | 18 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 2 |
Cofactors: | FMN |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.201 | 381.375 |
% Hydrophobic | % Polar |
---|---|
33.63 | 66.37 |
According to VolSite |
HET Code: | ORO |
---|---|
Formula: | C5H3N2O4 |
Molecular weight: | 155.088 g/mol |
DrugBank ID: | DB02262 |
Buried Surface Area: | 76.43 % |
Polar Surface area: | 98.33 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 2 |
Rings: | 1 |
Aromatic rings: | 0 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
-47.9609 | 93.1505 | -7.07618 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N1 | OD1 | ASN- 274 | 2.95 | 170.79 | H-Bond (Ligand Donor) |
O2 | ND2 | ASN- 274 | 3.05 | 169.11 | H-Bond (Protein Donor) |
O71 | N | GLY- 277 | 2.89 | 146.44 | H-Bond (Protein Donor) |
O72 | N | PHE- 278 | 3.01 | 138.74 | H-Bond (Protein Donor) |
O4 | ND2 | ASN- 342 | 3 | 159.45 | H-Bond (Protein Donor) |
N3 | OD1 | ASN- 458 | 2.78 | 176.82 | H-Bond (Ligand Donor) |
O4 | ND2 | ASN- 458 | 2.89 | 162.62 | H-Bond (Protein Donor) |
O2 | OG1 | THR- 459 | 2.8 | 163.74 | H-Bond (Protein Donor) |