2.320 Å
X-ray
2015-12-22
| Name: | Dihydroorotate dehydrogenase (quinone), mitochondrial |
|---|---|
| ID: | PYRD_PLAF7 |
| AC: | Q08210 |
| Organism: | Plasmodium falciparum |
| Reign: | Eukaryota |
| TaxID: | 36329 |
| EC Number: | 1.3.5.2 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 34.835 |
|---|---|
| Number of residues: | 21 |
| Including | |
| Standard Amino Acids: | 18 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 2 |
| Cofactors: | FMN |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.201 | 381.375 |
| % Hydrophobic | % Polar |
|---|---|
| 33.63 | 66.37 |
| According to VolSite | |

| HET Code: | ORO |
|---|---|
| Formula: | C5H3N2O4 |
| Molecular weight: | 155.088 g/mol |
| DrugBank ID: | DB02262 |
| Buried Surface Area: | 76.43 % |
| Polar Surface area: | 98.33 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 2 |
| Rings: | 1 |
| Aromatic rings: | 0 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| -47.9609 | 93.1505 | -7.07618 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| N1 | OD1 | ASN- 274 | 2.95 | 170.79 | H-Bond (Ligand Donor) |
| O2 | ND2 | ASN- 274 | 3.05 | 169.11 | H-Bond (Protein Donor) |
| O71 | N | GLY- 277 | 2.89 | 146.44 | H-Bond (Protein Donor) |
| O72 | N | PHE- 278 | 3.01 | 138.74 | H-Bond (Protein Donor) |
| O4 | ND2 | ASN- 342 | 3 | 159.45 | H-Bond (Protein Donor) |
| N3 | OD1 | ASN- 458 | 2.78 | 176.82 | H-Bond (Ligand Donor) |
| O4 | ND2 | ASN- 458 | 2.89 | 162.62 | H-Bond (Protein Donor) |
| O2 | OG1 | THR- 459 | 2.8 | 163.74 | H-Bond (Protein Donor) |