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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3w0p ADP Hygromycin-B 4-O-kinase 2.7.1.163

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3w0p ADPHygromycin-B 4-O-kinase 2.7.1.163 0.828
3w0q ANPHygromycin-B 4-O-kinase 2.7.1.163 0.803
3w0o ADPHygromycin-B 4-O-kinase 2.7.1.163 0.736
3w0n ANPHygromycin-B 4-O-kinase 2.7.1.163 0.701
3w0r ANPHygromycin-B 4-O-kinase 2.7.1.163 0.700
3w0s ANPHygromycin-B 4-O-kinase 2.7.1.163 0.672
2rd2 QSIGlutamine--tRNA ligase 6.1.1.18 0.653
3b2t M33Fibroblast growth factor receptor 2 / 0.651
4xc0 ACPHeat shock cognate 90 kDa protein / 0.651