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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vha VHA Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3vha VHAHeat shock protein HSP 90-alpha / 0.957
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3wha WHAHeat shock protein HSP 90-alpha / 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3b28 B2XHeat shock protein HSP 90-alpha / 0.743
2xhr C0PHeat shock protein HSP 90-alpha / 0.740
3r4n FU5Heat shock protein HSP 90-alpha / 0.740
3r4p FU7Heat shock protein HSP 90-alpha / 0.730
2qg0 A94Heat shock protein HSP 90-alpha / 0.708
3rlp 3RPHeat shock protein HSP 90-alpha / 0.708
3r4o FU3Heat shock protein HSP 90-alpha / 0.698
2qfo A13Heat shock protein HSP 90-alpha / 0.688
3peh IBDEndoplasmin homolog, putative / 0.685
2wi6 ZZ6Heat shock protein HSP 90-alpha / 0.681
1yet GDMHeat shock protein HSP 90-alpha / 0.674
2wi2 ZZ3Heat shock protein HSP 90-alpha / 0.671
2wi7 2KLHeat shock protein HSP 90-alpha / 0.667
4e5f 0N7Polymerase acidic protein / 0.660
3omu IBDHeat shock protein 83 / 0.659
3o6o 94MHeat shock protein 83 / 0.657