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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3upi 0C2 Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3upi 0C2Genome polyprotein 2.7.7.48 1.095
3uph 0C1Genome polyprotein 2.7.7.48 0.967
3tyv HI3Genome polyprotein 2.7.7.48 0.919
3ske 054Genome polyprotein 2.7.7.48 0.847
3ska 053Genome polyprotein 2.7.7.48 0.832
3u4r 08FGenome polyprotein 2.7.7.48 0.830
2yoj 8Y6Genome polyprotein 2.7.7.48 0.809
3u4o 08EGenome polyprotein 2.7.7.48 0.803
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4mk8 28QGenome polyprotein 2.7.7.48 0.722
4mkb 28VGenome polyprotein 2.7.7.48 0.691
4mka 2AYGenome polyprotein 2.7.7.48 0.681
4mk9 28RGenome polyprotein 2.7.7.48 0.669
4e5f 0N7Polymerase acidic protein / 0.660
3h5u H5UGenome polyprotein 2.7.7.48 0.650