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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3unj 0BX Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3unj 0BXCyclin-dependent kinase 2 2.7.11.22 1.036
3unk 0BYCyclin-dependent kinase 2 2.7.11.22 0.854
1urw I1PCyclin-dependent kinase 2 2.7.11.22 0.709
2vwz 7X6Ephrin type-B receptor 4 2.7.10.1 0.709
4fko 20KCyclin-dependent kinase 2 2.7.11.22 0.700
3sw7 19KCyclin-dependent kinase 2 2.7.11.22 0.693
4bc6 XZNSerine/threonine-protein kinase 10 2.7.11.1 0.691
2xmy CDKCyclin-dependent kinase 2 2.7.11.22 0.688
2vx1 7X8Ephrin type-B receptor 4 2.7.10.1 0.681
2vx0 7X7Ephrin type-B receptor 4 2.7.10.1 0.675
4qmn DB8Serine/threonine-protein kinase 24 2.7.11.1 0.672
3cjg KIMVascular endothelial growth factor receptor 2 2.7.10.1 0.667
4fv7 E94Mitogen-activated protein kinase 1 2.7.11.24 0.661
4mxo DB8Proto-oncogene tyrosine-protein kinase Src 2.7.10.2 0.659
2w06 FRVCyclin-dependent kinase 2 2.7.11.22 0.657
2xnb Y8LCyclin-dependent kinase 2 2.7.11.22 0.657
3rpy 27ZCyclin-dependent kinase 2 2.7.11.22 0.654
3rzb 02ZCyclin-dependent kinase 2 2.7.11.22 0.654
3qtu X44Cyclin-dependent kinase 2 2.7.11.22 0.653
3r9o Z71Cyclin-dependent kinase 2 2.7.11.22 0.653
4bcq TJFCyclin-dependent kinase 2 2.7.11.22 0.651