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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3u5s FAD FAD-linked sulfhydryl oxidase ALR 1.8.3.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3u5s FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.408
3u2l FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.331
3tk0 FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.298
4ldk FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.262
3u2m FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.217
3mbg FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.109
1oqc FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.076
1jra FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 1.073
4e0h FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 1.053
3w4y FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 1.051
1jr8 FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 1.035
3r7c FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.025
2hj3 FADFAD-linked sulfhydryl oxidase ERV1 / 0.984
3lli FADSulfhydryl oxidase 1 1.8.3.2 0.916
3llk FADSulfhydryl oxidase 1 1.8.3.2 0.893
4e0i FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.882
3t58 FADSulfhydryl oxidase 1 1.8.3.2 0.861
3t59 FADSulfhydryl oxidase 1 1.8.3.2 0.859
3td7 FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 0.782
3ust FADAcMNPV orf92 / 0.754
3gwn FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 0.752
3gwl FADFAD-linked sulfhydryl oxidase 1.8.3.2 0.740
4p2l FADSulfhydryl oxidase 1 1.8.3.2 0.729
3qzy FADFAD-linked sulfhydryl oxidase / 0.696
4opg FDAConserved Archaeal protein / 0.675
4hnb FMNLOV protein / 0.672
4opt FDAConserved Archaeal protein / 0.667
1cqx FADFlavohemoprotein / 0.664
4opi FDAConserved Archaeal protein / 0.664
4hj4 FMNLOV protein / 0.658
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.655