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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3to0 FMN Iodotyrosine deiodinase 1 1.21.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3to0 FMNIodotyrosine deiodinase 1 1.21.1.1 1.188
4ttc FMNIodotyrosine deiodinase 1 / 1.053
4ttb FMNIodotyrosine deiodinase 1 / 1.046
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 1.034
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.881
3bem FMNPutative NAD(P)H nitroreductase MhqN 1 0.817
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.816
3hj9 FMNUncharacterized protein / 0.808
4xoo FMNCoenzyme F420:L-glutamate ligase / 0.803
4qly FMNEnone reductase CLA-ER / 0.794
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.793
3e39 FMNNitroreductase / 0.792
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.780
3ge6 FMNNitroreductase / 0.772
3eo8 FMNPutative nitroreductase / 0.764
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.746
3qdl FMNOxygen-insensitive NADPH nitroreductase / 0.735
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.734
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 0.732
3koq FMNPutative nitroreductase / 0.719
3eof FMNPutative oxidase / 0.716
2wzv FMNNitroreductase NfnB / 0.713
1ds7 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.711
2wzw FMNNitroreductase NfnB / 0.710
1ylr FMNOxygen-insensitive NAD(P)H nitroreductase / 0.708
3x22 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.708
1kqd FMNOxygen-insensitive NAD(P)H nitroreductase / 0.702
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 0.698
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.694
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 0.692
1ooq FMNOxygen-insensitive NAD(P)H nitroreductase / 0.684
2ifa FMNUncharacterized protein / 0.683
1oo5 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.679
2bkj FMNNADPH-flavin oxidoreductase / 0.678
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 0.673
1ylu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.670
1kqc FMNOxygen-insensitive NAD(P)H nitroreductase / 0.668
3pxv FMNNitroreductase / 0.664
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 0.661
1aj2 2PHDihydropteroate synthase / 0.657
1nzd UPGDNA beta-glucosyltransferase / 0.650
2ikf UTPPoly(A) polymerase, putative / 0.650