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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3tk0 FAD FAD-linked sulfhydryl oxidase ALR 1.8.3.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3tk0 FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.376
3u5s FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.298
3u2l FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.295
4ldk FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.239
3u2m FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.215
3mbg FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.189
4e0h FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 1.084
3w4y FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 1.049
1oqc FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.031
3r7c FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.025
1jr8 FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 1.009
1jra FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.996
2hj3 FADFAD-linked sulfhydryl oxidase ERV1 / 0.934
4e0i FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.904
3lli FADSulfhydryl oxidase 1 1.8.3.2 0.869
3t58 FADSulfhydryl oxidase 1 1.8.3.2 0.856
3llk FADSulfhydryl oxidase 1 1.8.3.2 0.844
3t59 FADSulfhydryl oxidase 1 1.8.3.2 0.819
3td7 FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 0.788
4p2l FADSulfhydryl oxidase 1 1.8.3.2 0.751
3ust FADAcMNPV orf92 / 0.750
3gwl FADFAD-linked sulfhydryl oxidase 1.8.3.2 0.728
3qzy FADFAD-linked sulfhydryl oxidase / 0.719
1rp4 FADEndoplasmic oxidoreductin-1 1.8.4 0.696
4opi FDAConserved Archaeal protein / 0.684
4opt FDAConserved Archaeal protein / 0.684
3atq FDAConserved Archaeal protein / 0.668
4opl FDAConserved Archaeal protein / 0.664
4opu FDAConserved Archaeal protein / 0.657
3atr FDAConserved Archaeal protein / 0.652
1cqx FADFlavohemoprotein / 0.650